Microbiome Research Reports
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Editor-in-Chief: Marco Ventura
Indexing: ESCI, Scopus, PMC, CAS, Lens, ASCI,
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Microbiome Research Reports
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Editor-in-Chief: Marco Ventura
Median time to first editorial decision: 7 days
Home Articles Special Topics Volumes Webinars Videos

Microbiome Research Reports

In vitro human gut microbiota fermentation models: opportunities, challenges, and pitfalls

Mode of action of Akkermansia muciniphila in the intestinal dialogue: role of extracellular proteins, metabolites and cell envelope components

Microbial interactions and the homeostasis of the gut microbiome: the role of Bifidobacterium

MEGAnnotator2: a pipeline for the assembly and annotation of microbial genomes

Folate-producing bifidobacteria: metabolism, genetics, and relevance

Articles

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We need to talk about the virome

Colin Hill
Open Access Commentary DOI: 10.20517/mrr.2026.13 25 Jun 2026
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Early-life microbiome trajectories as biomarkers to predict health outcomes

Raphaela Joos, ...R. Paul Ross
Open Access Review DOI: 10.20517/mrr.2026.03 22 Jun 2026
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The gut virome and regulatory T cell axis in health and systemic disease

Dandan Bi, ...Jian Lu
Open Access Review DOI: 10.20517/mrr.2026.20 21 Jun 2026
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Intestinal microbiota in nursery pigs: comments on anatomical location, spatial niches, and approaches to data interpretation

Alexa R. Gormley, ...Sung Woo Kim
Open Access Commentary DOI: 10.20517/mrr.2026.21 11 Jun 2026
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Therapeutic potential of Lachnospiraceae strains in irritable bowel syndrome via differential gut-brain pathways

Wanyu Yang, ...Huizi Tan
Open Access Original Article DOI: 10.20517/mrr.2026.08 28 May 2026
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Past, present, and future of microbiome-based therapies

Pilar ManriquePilar Manrique, ... David Rios-CovianDavid Rios-Covian
Open Access Review DOI: 10.20517/mrr.2023.80 17 Mar 2024
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Phage therapy as a revitalized weapon for treating clinical diseases

Yingjie Wang, ...Yamei Yu
Open Access Review DOI: 10.20517/mrr.2025.31 23 Sep 2025
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A host-microbial metabolite interaction gut-on-a-chip model of the adult human intestine demonstrates beneficial effects upon inulin treatment of gut microbiome

Joanne M. DonkersJoanne M. Donkers, ... Evita van de Steeg
Open Access Original Article DOI: 10.20517/mrr.2023.79 21 Feb 2024
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Papers from the 2nd International Symposium on Bifidobacterial Biology

Prof. Marco Ventura; Prof. Douwe van Sinderen; Prof. Francesca Turroni

Submission Deadline: 31 Dec 2026

Published articles: 0

Gut–Brain Axis Mechanisms in Health and Disease: From Microbial Metabolites to Neural Circuitry

Prof. Gerard Clarke; Dr. Cristina Rosell Cardona

Submission Deadline: 31 Dec 2026

Published articles: 0

Coming soon.

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Themed Collections
bifidobacteria
gut microbiota
microbiome
probiotics
bacteriophage
phages
antibiotics
microbial
infant gut
microbial ecology
intestinal microbiome
host-microbe interactions
intestinal fungi
microbial ecosystems
metagenomics
microbial DNA sequencing
bifidobacterium
genomic
irritable bowel syndrome
Topic: Akkermansia muciniphila and Its Health Benefits: From Associations to Causality
Topic: Exploring the Infant Microbiome: From Birth to Early Growth and Development
Topic: Microbiomes of Arthropods and Their Environments
Volume 5, Issue 2 (in progress)
Volume 5, Issue 1
Volume 4, Issue 4
Volume 4, Issue 3
Volume 4, Issue 2
Volume 4, Issue 1
Volume 3, Issue 4
Volume 3, Issue 3
Volume 3, Issue 2
Volume 3, Issue 1
Volume 2, Issue 4
Volume 2, Issue 3
Volume 2, Issue 2
Volume 2, Issue 1
Volume 1, Issue 4
Volume 1, Issue 3
Volume 1, Issue 2
Volume 1, Issue 1
Special Issue: Akkermansia muciniphila and Its Health Benefits: From Associations to Causality
Microbiome Research Reports Secures a 2025 Journal Impact Factor of 5.2
MRR has secured a position within the top tier of the Q2 quartile in the Microbiology category, currently ranking 42nd out of 167 journals in this field.
Microbiome Research Reports Achieves 2025 CiteScore of 6.6
Ranked Q2 in Immunology and Microbiology: Microbiology Category, Continuing Its Strong Growth in Academic Impact
Targeting the Oncobiome: Mechanisms, Tumor Progression, and Therapeutic Interventions
Join Prof. Amedeo Amedei for a live webinar exploring tumor progression, host-microbiome interactions, and emerging therapeutic strategies.
May 26, 2026 | 10:00 AM (Italy Time)
Advancing Understanding in Microbiome Science: An Interview with Dr. David Rios‑Covian
Exploring gut microbial metabolism and its potential for innovative therapeutic applications - 2025 MRR High-Impact Paper Awardee
Microbiome Research Reports Scholars Recognized among Highly Cited Researchers 2025
7 Editorial Board Members, 10 Contributing Authors, and 1 Guest Editor Honored for Outstanding Impact in Microbiology and Cross-Field Research

In vitro human gut microbiota fermentation models: opportunities, challenges, and pitfalls

Mode of action of Akkermansia muciniphila in the intestinal dialogue: role of extracellular proteins, metabolites and cell envelope components

Microbial interactions and the homeostasis of the gut microbiome: the role of Bifidobacterium

MEGAnnotator2: a pipeline for the assembly and annotation of microbial genomes

Folate-producing bifidobacteria: metabolism, genetics, and relevance

Past, present, and future of microbiome-based therapies
Pilar ManriquePilar Manrique, ... David Rios-CovianDavid Rios-Covian
Open Access | Review | 17 Mar 2024
Views: | Downloads:
Download PDF
Phage therapy as a revitalized weapon for treating clinical diseases
Yingjie Wang, ...Yamei Yu
Open Access | Review | 23 Sep 2025
Views: | Downloads:
Download PDF
A host-microbial metabolite interaction gut-on-a-chip model of the adult human intestine demonstrates beneficial effects upon inulin treatment of gut microbiome
Joanne M. DonkersJoanne M. Donkers, ... Evita van de Steeg
Open Access | Original Article | 21 Feb 2024
Views: | Downloads:
Download PDF

Papers from the 2nd International Symposium on Bifidobacterial Biology

Prof. Marco Ventura; Prof. Douwe van Sinderen; Prof. Francesca Turroni

Submission Deadline: 31 Dec 2026

Published articles: 0

Gut–Brain Axis Mechanisms in Health and Disease: From Microbial Metabolites to Neural Circuitry

Prof. Gerard Clarke; Dr. Cristina Rosell Cardona

Submission Deadline: 31 Dec 2026

Published articles: 0

Coming soon.

Volume 5, Issue 2 (in progress)
Volume 5, Issue 1
Volume 4, Issue 4
Volume 4, Issue 3
Volume 4, Issue 2
Volume 4, Issue 1
Volume 3, Issue 4
Volume 3, Issue 3
Volume 3, Issue 2
Volume 3, Issue 1
Volume 2, Issue 4
Volume 2, Issue 3
Volume 2, Issue 2
Volume 2, Issue 1
Volume 1, Issue 4
Volume 1, Issue 3
Volume 1, Issue 2
Volume 1, Issue 1
Microbiome Research Reports
ISSN 2771-5965 (Online)
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https://members.publicationethics.org/members/microbiome-research-reports

Portico

All published articles are preserved here permanently:

https://www.portico.org/publishers/oae/
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